Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0794303.3af with 1 members (Peptidase S1 domain-containing protein)

Opisthokonta / Metazoa / Eumetazoa / Bilateria /

Completeness score: 0.00

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This HOG has 50 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E1001704.6a.3b	3	29	peptidase S1 and S6 chymotrypsin/Hap
2	HOG:E0727648.1b	3	10	Mast cell protease
3	HOG:E0794303.3cl.50b.31a	2	3	Peptidase S1 domain-containing protein
4	HOG:E0794303.2n.2d	2	19	Peptidase S1 domain-containing protein
5	HOG:E1039994	1	22	Peptidase S1 domain-containing protein
6	HOG:E1001704.6a.6d.2b	1	1	peptidase S1 and S6 chymotrypsin/Hap
7	HOG:E1001704.6a.6d.2a	1	1	peptidase S1 and S6 chymotrypsin/Hap
8	HOG:E1001704.6a.6c	1	2	peptidase S1 and S6 chymotrypsin/Hap
9	HOG:E1001704.6a.6b	1	2	peptidase S1 and S6 chymotrypsin/Hap
10	HOG:E1001704.6a.6a	1	2	peptidase S1 and S6 chymotrypsin/Hap
11	HOG:E0912593	1	5	Putative uncharacterized protein
12	HOG:E0892292.9b	1	1	putative trypsin-like protease
13	HOG:E0892292	1	57	putative trypsin-like protease
14	HOG:E0827794	1	40	Peptidase S1 domain-containing protein
15	HOG:E0805469.5d	1	5	Peptidase S1 domain-containing protein
16	HOG:E0794303.2q.3j	1	1	Peptidase S1 domain-containing protein
17	HOG:E0794303.2q.3e	1	1	Peptidase S1 domain-containing protein
18	HOG:E0794303.2q.3aj	1	1	Peptidase S1 domain-containing protein
19	HOG:E0794303.2n.1l	1	1	Peptidase S1 domain-containing protein
20	HOG:E0794303.1y	1	1	Peptidase S1 domain-containing protein
21	HOG:E0794303.1w	1	1	Peptidase S1 domain-containing protein
22	HOG:E0729742.1d	1	1	Peptidase S1 domain-containing protein
23	HOG:E0727733.1a.1b.2a.1b	1	1	Peptidase S1 domain-containing protein
24	HOG:E0727733.1a.1b.2a.1a	1	1	Peptidase S1 domain-containing protein
25	HOG:E0727733.1a.1b.1g	1	1	Peptidase S1 domain-containing protein

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